scVelo
latest
Main
About scVelo
Installation
API
Release Notes
References
Tutorials
Getting Started
RNA Velocity Basics
Dynamical Modeling
Differential Kinetics
Other Vignettes
Perspectives
Challenges and Perspectives
scVelo
»
Index
Edit on GitHub
Index
B
|
C
|
D
|
F
|
G
|
H
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
V
B
bonemarrow() (in module scvelo.datasets)
C
clean_obs_names() (in module scvelo.utils)
cleanup() (in module scvelo.utils)
convert_to_ensembl() (in module scvelo.utils)
convert_to_gene_names() (in module scvelo.utils)
D
dentategyrus() (in module scvelo.datasets)
dentategyrus_lamanno() (in module scvelo.datasets)
differential_kinetic_test() (in module scvelo.tl)
F
filter_and_normalize() (in module scvelo.pp)
filter_genes() (in module scvelo.pp)
filter_genes_dispersion() (in module scvelo.pp)
forebrain() (in module scvelo.datasets)
G
gastrulation() (in module scvelo.datasets)
gastrulation_e75() (in module scvelo.datasets)
gastrulation_erythroid() (in module scvelo.datasets)
gene_info() (in module scvelo.utils)
get_cell_transitions() (in module scvelo.utils)
get_df() (in module scvelo)
get_extrapolated_state() (in module scvelo.utils)
get_moments() (in module scvelo.utils)
get_transition_matrix() (in module scvelo.utils)
H
heatmap() (in module scvelo.pl)
hist() (in module scvelo.pl)
L
latent_time() (in module scvelo.tl)
leastsq() (in module scvelo.utils)
log1p() (in module scvelo.pp)
louvain() (in module scvelo.tl)
M
merge() (in module scvelo.utils)
module
scvelo
moments() (in module scvelo.pp)
N
neighbors() (in module scvelo.pp)
normalize_per_cell() (in module scvelo.pp)
P
paga() (in module scvelo.pl)
(in module scvelo.tl)
pancreas() (in module scvelo.datasets)
pbmc68k() (in module scvelo.datasets)
pca() (in module scvelo.pp)
proportions() (in module scvelo.pl)
R
rank_dynamical_genes() (in module scvelo.tl)
rank_velocity_genes() (in module scvelo.tl)
read() (in module scvelo)
read_loom() (in module scvelo)
recover_dynamics() (in module scvelo.tl)
S
scatter() (in module scvelo.pl)
score_genes_cell_cycle() (in module scvelo.tl)
scvelo
module
set_figure_params() (in module scvelo)
show_proportions() (in module scvelo.utils)
simulation() (in module scvelo.datasets)
T
terminal_states() (in module scvelo.tl)
test_bimodality() (in module scvelo.utils)
U
umap() (in module scvelo.tl)
V
vcorrcoef() (in module scvelo.utils)
velocity() (in module scvelo.pl)
(in module scvelo.tl)
velocity_clusters() (in module scvelo.tl)
velocity_confidence() (in module scvelo.tl)
velocity_embedding() (in module scvelo.pl)
(in module scvelo.tl)
velocity_embedding_grid() (in module scvelo.pl)
velocity_embedding_stream() (in module scvelo.pl)
velocity_graph() (in module scvelo.pl)
(in module scvelo.tl)
velocity_pseudotime() (in module scvelo.tl)
Read the Docs
v: latest
Versions
latest
stable
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds